SNP Profiles of ICS 43   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._ICS43
__CC________CT_CT
21._RUQ_144
CTAGGGCTTTCCGTCTCTAA_CTAACT
22._ICS_43
CTAGGGCTTTCCGTCTCTAAAACTAACT
23._RUQ_144
_AGGGCT__GT____CTAA_
24._RUQ_144
__GG___GT_CT_AA_AA_
25._RUQ_144
AGAGCCAGAAGGAA__AAAAAGAAAG
26._ICS_43_Fld#_164_Plt#_1
AGAGCCAGAAGGAA__AAAAAGAAAG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCCCCCGGCCAAGG
1._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
2._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
3._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
4._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
5._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
6._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
7._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
8._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
9._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
10._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
11._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
12._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
13._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
14._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
15._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
16._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
17._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
18._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAA_
19._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAA_
20._ICS43
___CCCC___AACC____
21._RUQ_144
AAGGTTCCGGGTAGTTAACCTTTTCCAG
22._ICS_43
AAGGTTCCGGGTAGTTAACCTTTTCCAG
23._RUQ_144
___CCGGGT_TTAACCTTTTCCAG
24._RUQ_144
____GGGTAG_AACC__CC_
25._RUQ_144
AAGGAAGGCCAC_AAAACCAA_CC_
26._ICS_43_Fld#_164_Plt#_1
AAGGAAGGCCAC_AAAACCAA_CC_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
5._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
14._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
15._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
16._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
17._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
18._GC-01-051-3-06
GGAACC_CCAATTTTAAAAGGX_XX_XX_X
19._ICS_43
GGAACC_CCAATTTTAAAAGGX_XX_XX_X
20._ICS43
_AA_GGCGACCT_AC__X_XX_XX_X
21._RUQ_144
AGAACTGGCGACCTGTACTTGGX_XX_XX_X
22._ICS_43
AGAACTGG_ACCTGTACTTGGX_XX_XX_X
23._RUQ_144
_AACTGGCGACCTGTAC__X_XX_XX_X
24._RUQ_144
___GG____AC__X_XX_XX_X
25._RUQ_144
GGAAAGGGCGACAGACACTTGGX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
GGAAAGGGCGACAGACACTTGGX_XX_XX_X

Input profile: ICS_43

 
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Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

2._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._ICS_43 GC-01-051-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

12._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

13._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

14._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

15._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

16._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

17._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

18._ICS_43 GC-01-051-3-06

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

20._ICS_43 ICS43

61.5 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

50 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43

48.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

23._ICS_43 RUQ_144

45.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._ICS_43 RUQ_144

42.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

32.4 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

32.4 %
34 shared markers

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USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25